PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513686.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 437aa    MW: 47025.1 Da    PI: 8.0123
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09112133426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C ++ + G C+yG+rCkF H+
  XP_004513686.1 112 RVCTYWIQ-GNCSYGERCKFLHS 133
                     78******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.2442248IPR000571Zinc finger, CCCH-type
SMARTSM003560.0652347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042109135IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5110134IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6112133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-7112132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6112133IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.56E-50132187IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.1E-17133248IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.7E-5139178IPR001680WD40 repeat
PfamPF004005.7E-4142178IPR001680WD40 repeat
PROSITE profilePS5008214.184146187IPR001680WD40 repeat
PROSITE profilePS5029422.438146348IPR017986WD40-repeat-containing domain
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
PRINTSPR003209.6E-7165179IPR020472G-protein beta WD-40 repeat
SMARTSM003201.1218255IPR001680WD40 repeat
SuperFamilySSF509782.56E-50225429IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.1E-34249427IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.7E-4262299IPR001680WD40 repeat
PfamPF004000.0012266299IPR001680WD40 repeat
PROSITE profilePS5008213.282269308IPR001680WD40 repeat
PROSITE patternPS006780286300IPR019775WD40 repeat, conserved site
PRINTSPR003209.6E-7286300IPR020472G-protein beta WD-40 repeat
SMARTSM003204.5E-5302339IPR001680WD40 repeat
PfamPF004001.9E-4304338IPR001680WD40 repeat
PRINTSPR003209.6E-7326340IPR020472G-protein beta WD-40 repeat
SMARTSM003203343386IPR001680WD40 repeat
SMARTSM003206389426IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDFDGGNKRV YNRLGGPTGG DSKNQKVCFQ WQAGKCSRYP CPFLHSELPS FNGNGAPSKR  60
PYGSGENSSF SGRRGGASFN TWGRGGGRGR GGGGRGGVGG GGGRGVVVSG DRVCTYWIQG  120
NCSYGERCKF LHSWSLGDGF SLLTQLEGHK KVVSGIAMPS GSDKLYTGST DETVRVWDCQ  180
SGQCIAVINL GGEVGCMISE GPWVFVGIPN FVKAWNTQNS MELSLNGPVG QVYALVVIND  240
MLFAGTQDGS ILVWKFNVVA NCFEPAASLK GHSRGVVSLV VGANRLYSGS MDNTIRVWNL  300
ETLQCIQTLT GHTSVVMSVL CWDQFLLSCS LDKTVKVWFA TEGGNLEVTY THTEEHGIVT  360
LCGMHDSQGK PILMCSCNDN TVRLYDLPSF AERGKIFNKQ EVRAIQAGPG SIFFTGDGTG  420
QVRVWNWIPE PANNSIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovr_B3e-19165437114391F-box/WD repeat protein 7
2ovq_B3e-19165437114391F-box/WD repeat protein 7
2ovp_B3e-19165437114391F-box/WD repeat protein 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100GGRGGVGGG
294103RGGVGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150447e-48AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513686.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A072U9U50.0A0A072U9U5_MEDTR; Uncharacterized protein
STRINGGLYMA16G32370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1